PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G061800.3.p
Common NamePRUPE_ppa008833mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 304aa    MW: 33920.7 Da    PI: 4.8949
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G061800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.51.1e-1532123187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk + ++ ++ + + +s++p+f++l+
  Prupe.4G061800.3.p  32 CWSEDATSTLVDAWGRRYLELNRGCLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKFEMNRVSSSNGTLTSSWPFFERLD 122
                         7****************************************99999*********************9988888887788889******98 PP

            trihelix  87 a 87 
                         a
  Prupe.4G061800.3.p 123 A 123
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2530124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGDLTDPQMT PSHATATTPS SNPRPMPVRE DCWSEDATST LVDAWGRRYL ELNRGCLRQK  60
DWQEVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKFE MNRVSSSNGT LTSSWPFFER  120
LDALIGSNYK KPSPSPPVAV PLPLGYRKTP SPATVVTAVG LPQKRSASSA AVDEGFFRMN  180
YSAVAAAAAA EAEDDDDEDE DEDDEVNYEV DEEVEMERER DSGGEIGGGG GGEGLKRLAR  240
AIERFGEVYQ RVEAEKLRQM VDLEKQRMQF ANDLEVQRMN MFMDTQVQLE RIKHGKRSGS  300
NGW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211645.10.0hypothetical protein PRUPE_ppa008833mg
TrEMBLM5WGJ40.0M5WGJ4_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s11850.11e-117(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-37sequence-specific DNA binding transcription factors